PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745766
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 595aa    MW: 67031.4 Da    PI: 9.2246
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745766genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000256283223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               kC++C++ F ++ n++rH r+H
  676745766 62 KCEKCTREFCSPVNYRRHNRMH 83
               7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8066188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MELVKQDGND SLDMLLRRAV GKDPFLSFPR PESNPVQLFQ LLHTLERPGW PLLTPLKIQM  60
QKCEKCTREF CSPVNYRRHN RMHRRLRKPE KDSGKERDAL GEFWNKLSVV DAKEILSLKS  120
MMLENVPGES VESGLMSLIE KPGYTALPQY YLRAGSDLLD IIQARPPRFP ISSQELFSIL  180
DDASEKTFLS SEAAPMQKYI FDGENGKNVL EAKNVVACAS FLLEQRLIKA WLADKDAEAL  240
RCQNLLVEEE EAARRRHAEL LERKKRKKLR QKEQRVKDQK KDTKEDESTT SEEQQQSPAE  300
SSSPLSVTSD SEAQRSDFMP IEDSSSLEEP QVLEMENGRN GETQAPMVDD DGFGNGQNME  360
RRSGRRQMEK RSQHGMPNGF HGNHAPKLGS VRKNGTNRDA RVSTTKVWSR KANNPKSISS  420
DAAVAEQDET KNSEVLIGSV SVTIRNSSLS GEYNQAKCSE EEGRTKTVEA KPTSEQSTGK  480
VWRQVSSQGR KVSTANENTD KKDKNSSSTA PEVKTAHHIS LQFNNHEAKA FLAKRWKEAT  540
SAEHVTLVLS QETDMSGNNN THESSNGVIT AARPKLRMRP EKGTKVKYVP KLRIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253267RRRHAELLERKKRKK
2261268ERKKRKKL
3263267KKRKK
4266276KKLRQKEQRVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413290.10.0hypothetical protein EUTSA_v10024755mg
TrEMBLV4MP250.0V4MP25_EUTSA; Uncharacterized protein
STRINGBra013903.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein